ISOLATION AND IDETIFICATION OF LACTIC ACID BACTERIA FROM ANNA APPLE CULTIVAR (Malus domestica var. Anna) AS POTENTIAL EXOPOLYSACCHARIDE PRODUCER

  • Nur Kusmiyati Department of Food Science and Biotechnology, Faculty of Agricultural Technology, Universitas Brawijaya, Malang
  • Elok Zubaidah Department of Food Science and Biotechnology, Faculty of Agricultural Technology, Universitas Brawijaya, Malang
  • Emmanuel Raphael Lesmana Department of Food Science and Biotechnology, Faculty of Agricultural Technology, Universitas Brawijaya, Malang
  • Ulfah Utami Department of Food Science and Biotechnology, Faculty of Agricultural Technology, Universitas Brawijaya, Malang
Keywords: lactic acid bacteria, exopolysaccharide, Malus domestica var. Anna

Abstract


Lactic acid bacteria (LABs) are a group of microorganisms frequently found in various fermented foods, fruits, vegetables, and the human gut microflora. LABs are known for its ability to produce lactic acid via carbohydrate fermentation (typically simple sugars), which play major roles as flavour compounds as well as in maintaining food safety and stability. Furthermore, LABs are classified as food grade microorganisms since they are safe for human consumption, non-pathogenic, and generally does not produce compounds which are toxic to humans. Several species of LABs are a known to produce exopolysaccharide (EPS), a polysaccharide which is excreted from the cell during bacterial growth phase. LAB-produced EPS have comparable physicochemical properties to certain plant polysaccharides such as guar gum or pectin.  Hence, it is commonly used in food industries as a thickener, stabilizer, and to improve rheological properties of food products. In the baking industry (especially bread making), EPS plays an important role as a partial replacement for gluten, improving bread volume, and reduce bread crumbliness, resulting in better product quality. This study aims to isolate and identify LABs from the mesocarp (fruit flesh) of Anna apple cultivar (Malus domestica var. Anna), as a potential EPS producer. Isolation and purification of LAB produced eight isolates, respectively BAA-1 through BAA-8. The isolates were then characterized via Gram staining, endospore staining, catalase activity assay, carbohydrate fermentation assay, and EPS production yield. Results indicate that isolate BAA-5 and BAA-8 produced the highest yields of EPS, which were 3350 mg/L and 3050 mg/L respectively. Further molecular identification showed that isolate BAA-5 had a 98.68% gene similarity to Lacticaseibacillus paracasei, while isolate BAA-8 had a 99.74% similarity to Lactiplantibacillus plantarum. Thus, the two isolates can potentially be developed as functional agents in food industrial applications.

References

Ageeli, A. A., & Mohamed, S. F. (2025). Extraction, purification and characterization of exopolysaccharide from Lactiplantibacillus plantarum B7 with potential antioxidant, antitumor and anti-inflammatory activities. Processes, 13(4), 935. https://doi.org/10.3390/pr13040935
Amer, M. S., Barakat, K. M., Ibrahim, H. A. H., Matsuo, K., & Ibrahim, M. I. A. (2025). An overview on marine bacterial exopolysaccharides and their industrial applications. Journal of Carbohydrate Chemistry, 44(4–6), 95–132. https://doi.org/10.1080/07328303.2025.2480564
Bartoš, O., Chmel, M., & Swierczková, I. (2024). The overlooked evolutionary dynamics of 16S rRNA revises its role as the “gold standard” for bacterial species identification. Scientific Reports, 14, 9067. https://doi.org/10.1038/s41598-024-59667-3
Bengoa, A.A., Dueñas, M.T., Prieto, A., Garrote, G.L. & Abraham, A.G. (2023). Exopolysaccharide-producing Lacticaseibacillus paracasei strains isolated from kefir as starter for functional dairy products. Frontiers in Microbiology, 14, 1110177. https://doi.org/10.3389/fmicb.2023.1110177
Borowska, M., Ispiryan, L., Neylon, E., Sahin, A. W., Murphy, C. P., Zannini, E., Arendt, E. K., & Coffey, A. (2023). Screening and application of novel homofermentative lactic acid bacteria results in low-FODMAP whole-wheat bread. Fermentation, 9(4), 336. https://doi.org/10.3390/fermentation9040336
Buetas, E., Jordán-López, M., López-Roldán, A., D’Auria, G., Martínez-Priego, L., De Marco, G., Carda-Diéguez, M., & Mira, A. (2024). Full-length 16S rRNA gene sequencing by PacBio improves taxonomic resolution in human microbiome samples. BMC Genomics, 25, 310. https://doi.org/10.1186/s12864-024-10213-5
Cen, S., Yin, R., Mao, B., Zhao, J., Zhang, H., Zhai, Q., & Chen, W. (2020). Comparative genomics shows niche-specific variations of Lactobacillus plantarum strains isolated from human, Drosophila melanogaster, vegetable and dairy sources. Food Bioscience, 35, 100581. https://doi.org/10.1016/j.fbio.2020.100581
Dey, T. K., Lindahl, J. F., Sanjukta, R., Milton, A. A. P., Das, S., Kannan, P., Lundkvist, Å., Sen, A., & Ghatak, S. (2023). Characterization of lactic acid bacteria and pathogens isolated from traditionally fermented foods, in relation to food safety and antimicrobial resistance in tribal hill areas of Northeast India. Journal of Food Quality, 2023, Article 6687015. https://doi.org/10.1155/2023/6687015
Dinu, L.-D., Al-Zaidi, Q. J., Matache, A. G., & Matei, F. (2024). Improving the efficiency of viability-qPCR with lactic acid enhancer for the selective detection of live pathogens in foods. Foods, 13(7), 1021. https://doi.org/10.3390/foods13071021
Fuso, A., Bancalari, E., Castellone, V., Caligiani, A., Gatti, M. & Bottari, B. (2023). Feeding lactic acid bacteria with different sugars: Effect on exopolysaccharides (EPS) production and their molecular characteristics. Foods, 12(1), 215. https://doi.org/10.3390/foods12010215
Gupta, S., Mohanty, U., & Majumdar, R. K. (2021). Isolation and characterization of lactic acid bacteria from traditional fermented fish product Shidal of India with reference to their probiotic potential. LWT – Food Science and Technology, 146, 111641. https://doi.org/10.1016/j.lwt.2021.111641
Han, K., Naveen, K. V., Zhang, X., Sathiyaseelan, A., & Kim, H.-Y. (2025). Cellular antioxidant potential and cytotoxic activities of extracellular polysaccharides isolated from Lactobacillus graminis strain KNUAS018. Polysaccharides, 6(2), 33. https://doi.org/10.3390/polysaccharides6020033
Hernández-Figueroa, R. H., López-Malo, A., & Mani-López, E. (2025). Lactic acid bacteria-derived exopolysaccharides: Dual roles as functional ingredients and fermentation agents in food applications. Fermentation, 11(9), 538. https://doi.org/10.3390/fermentation11090538
Hoefle, D., Ramakrishnan, D. K., Holländer, M.-A., Kiplimo, D., Konzag, W., Schena, L., Malacrinò, A., Tack, A. J. M., & Abdelfattah, A. (2025). Fruit function beyond dispersal: Effect of fruit decomposition on the plant microbiome assembly. New Phytologist. Advance online publication. https://doi.org/10.1111/nph.70698
Imade, E. E., Omonigho, S. E., Babalola, O. O., Enagbonma, B. J., Igiehon, O. N., & Ogofure, A. G. (2024). Dataset of 16S ribosomal DNA sequence-based identification of bacteriocinogenic lactic acid bacteria isolated from fermented food samples. Data in Brief, 52, 110021. https://doi.org/10.1016/j.dib.2023.110021
Imran, M.Y.M., Reehana, N., Jayaraj, K.A., Ahamed, A.A.P., Dhanasekaran, D., Thajuddin, N., Alharbi, N.S., & Muralitharan, G. (2016). Statistical optimization of exopolysaccharide production by Lactobacillus plantarum NTMI05 and NTMI20. International Journal of Biological Macromolecules, 93, 731-745. https://doi.org/10.1016/j.ijbiomac.2016.09.007
Jawaid, M. Z., Ashfaq, M. Y., Al-Ghouti, M., & Zouari, N. (2024). Insights into population adaptation and biodiversity of lactic acid bacteria in challenged date palm leaves silaging, using MALDI–TOF MS. Current Research in Microbial Sciences, 6, 100235. https://doi.org/10.1016/j.crmicr.2024.100235
Johnson, J. S., Demkowicz, P., Spakowicz, D. J., Hong, B.-Y., Petersen, L. M., Chen, L., Leopold, S. R., Hanson, B. M., Agresta, H. O., Gerstein, M., Sodergren, E., & Weinstock, G. M. (2019). Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis. Nature Communications, 10, 5029. https://doi.org/10.1038/s41467-019-13036-1
Joshi, T. J., Salini, S. V., Mohan, L., Nandagopal, P., & Arakal, J. J. (2024). Functional metabolites of probiotic lactic acid bacteria in fermented dairy products. Food and Humanity, 3, 100341. https://doi.org/10.1016/j.foohum.2024.100341
Jurášková, D., Ribeiro, S. C., & Silva, C. C. G. (2022). Exopolysaccharides produced by lactic acid bacteria: From biosynthesis to health-promoting properties. Foods, 11(2), 156. https://doi.org/10.3390/foods11020156
Korcz, E., & Varga, L. (2021). Exopolysaccharides from lactic acid bacteria: Techno-functional application in the food industry. Trends in Food Science & Technology, 110, 375–384. https://doi.org/10.1016/j.tifs.2021.02.014
Kusmiyati, N., Wicaksono, S. T., & Sukarno, A. S. (2022). Isolation and characterization of probiotic lactic acid bacteria from human breast milk. Nova Biotechnologica et Chimica, xx(xx), e1053. https://doi.org/10.36547/nbc.1053
Laranjo, M. (2023). Starter cultures and their role in fermented foods. In C. J. Hurst (Ed.), Fermented foods (Chapter 11). John Wiley & Sons. https://doi.org/10.1002/9781119850007.ch11
Lemoine, F. and Gascuel, O. (2024). The Bayesian phylogenetic bootstrap and its application to short trees and branches. Molecular Biology and Evolution, 41(11), p.msae238. https://doi.org/10.1093/molbev/msae238
Li, M.-N., Han, Q., Wang, N., Wang, T., You, X.-M., Zhang, S., Zhang, C.-C., Shi, Y.-Q., Qiao, P.-Z., Man, C.-L., Feng, T., Li, Y.-Y., Zhu, Z., Quan, K.-J., Xu, T.-L., & Zhang, G. F. (2024). 16S rRNA gene sequencing for bacterial identification and infectious disease diagnosis. Biochemical and Biophysical Research Communications, 739, 150974. https://doi.org/10.1016/j.bbrc.2024.150974
Li, R., & Bi, C. (2025). Comparative genomic analysis of Lactiplantibacillus plantarum: Insights into its genetic diversity, metabolic function, and antibiotic resistance. Genes, 16(8), 869. https://doi.org/10.3390/genes16080869
Linares-Morales, J. R., Cuellar-Nevárez, G. E., Rivera-Chavira, B. E., Gutiérrez-Méndez, N., Pérez-Vega, S. B., & Nevárez-Moorillón, G. V. (2020). Selection of lactic acid bacteria isolated from fresh fruits and vegetables based on their antimicrobial and enzymatic activities. Foods, 9(10), 1399. https://doi.org/10.3390/foods9101399
Lozano-Fernandez, J. (2022). A practical guide to design and assess a phylogenomic study. Genome Biology and Evolution, 14(9), p.evac129. https://doi.org/10.1093/gbe/evac129
Mokoena, M. P. (2017). Lactic acid bacteria and their bacteriocins: Classification, biosynthesis and applications against uropathogens: A mini-review. Molecules, 22(8), 1255. https://doi.org/10.3390/molecules22081255
Nandhini, G., Prasanth, S., Selvi, K.S., & Sundaresan, S. (2025). Isolation and characterization of probiotic lactic acid bacteria isolated from fermented South Indian cereals. International Journal of Nutrition, Pharmacology, Neurological Diseases, 15(2), 135-141. 10.4103/ijnpnd.ijnpnd_92_24
Olivier, S. A., Bull, M. K., Strube, M. L., Murphy, R., Ross, T., Bowman, J. P., & Chapman, B. (2023). Long-read MinION™ sequencing of 16S and 16S-ITS-23S rRNA genes provides species-level resolution of Lactobacillaceae in mixed communities. Frontiers in Microbiology, 14, 1290756. https://doi.org/10.3389/fmicb.2023.1290756
Ouarabi, L., Ouarabi, L., Hamma-Faradji, S., Mohedano, M. L., López, P., & Drider, D. (2025). Exopolysaccharides from lactic acid bacteria: Structure, biosynthesis, and health benefits. Microbes and Infection, 105581. Advance online publication. https://doi.org/10.1016/j.micinf.2025.105581
Panthavee, W., Noda, M., Danshiitsoodol, N., Kumagai, T. & Sugiyama, M. (2017). Characterization of exopolysaccharides produced by thermophilic lactic acid bacteria isolated from tropical fruits of Thailand. Biological and Pharmaceutical Bulletin, 40(5), 621-629. https://doi.org/10.1248/bpb.b16-00856
Rama, G. R., Bucker, F., Salazar, M. M., Ray, S., & Granada, C. E. (2024). Lactic acid bacteria: Taxonomy, characteristic features, physiology, and diversity. Dalam Antimicrobial peptides from lactic acid bacteria (pp. 1–32). Springer.
Riesco, R., & Trujillo, M. E. (2024). Update on the proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. International Journal of Systematic and Evolutionary Microbiology, 74, 006300. https://doi.org/10.1099/ijsem.0.006300
Rozanov, A. S., Shaposhnikov, L. A., Bondarenko, K. D., & Sazonov, A. E. (2025). Advances in genetic transformation of lactic acid bacteria: Overcoming barriers and enhancing plasmid tools. International Journal of Molecular Sciences, 26(18), 9146. https://doi.org/10.3390/ijms26189146
Ruas-Madiedo, P., & de los Reyes-Gavilán, C. G. (2005). Invited review: Methods for the screening, isolation, and characterization of exopolysaccharides produced by lactic acid bacteria. Journal of Dairy Science, 88(3), 843–856. https://doi.org/10.3168/jds.S0022-0302(05)72750-8
Silva, L.A., Lopes Neto, J.H.P. & Cardarelli, H.R. (2019). Exopolysaccharides produced by Lactobacillus plantarum: technological properties, biological activity, and potential application in the food industry. Annals of Microbiology, 69(4), 321-328. https://doi.org/10.1007/s13213-019-01456-9
Stephen, J.M. and Saleh, A.M. (2023). Homofermentative Lactobacilli isolated from organic sources exhibit potential ability of lactic acid production. Frontiers in Microbiology, 14, 1297036. 10.3389/fmicb.2023.1297036
Sulmiyati, S.N., Fahrodi, D.U., Malaka, R., & Maruddin, F. (2018). The characteristics of lactic acid bacteria isolated from Indonesian commercial kefir grain. Malaysian Journal of Microbiology, 14(7), 632-9. 10.21161/mjm.117317
Swanson, K. S., Gibson, G. R., Hutkins, R., Reimer, R. A., Reid, G., Verbeke, K., Scott, K. P., Holscher, H. D., Azad, M. B., Delzenne, N. M., & Sanders, M. E. (2020). The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on the definition and scope of synbiotics. Nature Reviews Gastroenterology & Hepatology, 17(11), 687–701. https://doi.org/10.1038/s41575-020-0344-2
Vaishnav, A., Upadhyay, K., Tipre, D. & Dave, S. (2016). Characterization of potent exopolysaccharide producing bacteria isolated from fruit pulp and potato peels and enhancement in their exopolysaccharide production potential. The Journal of Microbiology, Biotechnology and Food Sciences, 6(3), 874. 10.15414/jmbfs.2016/17.6.3.874-877
Tian, C., Wang, L., Liu, M., Liu, J., Qiu, M., & Chen, Y. (2024). Isolation and identification of chicken-derived lactic acid bacteria: in vitro probiotic properties and antagonistic effects against Salmonella pullorum, Staphylococcus aureus, and Escherichia Coli. Microorganisms, 12(4), 795. 10.3390/microorganisms12040795
Veselá, K., Kumherová, M., Klojdová, I., Solichová, K., Horáčková, Š., & Plocková, M. (2019). Selective culture medium for the enumeration of Lactobacillus plantarum in the presence of Lactobacillus delbrueckii subsp. bulgaricus and Streptococcus thermophilus. LWT – Food Science and Technology, 114, 108365. https://doi.org/10.1016/j.lwt.2019.108365
Wang, X., Tian, J., Zhang, X., Tang, N., Rui, X., Zhang, Q., Dong, M. & Li, W. (2022). Characterization and immunological activity of exopolysaccharide from Lacticaseibacillus paracasei GL1 isolated from Tibetan kefir grains. Foods, 11(21), 3330. https://doi.org/10.3390/foods11213330
Wicaksono, W. A., Buko, A., Kusstatscher, P., Cernava, T., Sinkkonen, A., Laitinen, O. H., Virtanen, S. M., Hyöty, H., & Berg, G. (2023). Impact of cultivation and origin on the fruit microbiome of apples and blueberries and implications for the exposome. Microbial Ecology, 86, 973–984. https://doi.org/10.1007/s00248-022-02157-8
Xin, W.-G., Li, X.-D., Zhou, H.-Y., Li, X., Liu, W.-X., Lin, L.-B., & Wang, F. (2024). Isolation, antibacterial characterization, and alternating tangential flow–based preparation of viable cells of Lacticaseibacillus paracasei XLK 401: Potential application in milk preservation. Journal of Dairy Science, 107(3), 1355–1369. https://doi.org/10.3168/jds.2023-23622
Xiong, J., Liu, D.-M., & Huang, Y.-Y. (2023). Exopolysaccharides from Lactiplantibacillus plantarum*: Isolation, purification, structure–function relationship, and application*. European Food Research and Technology, 249, 1431–1448. https://doi.org/10.1007/s00217-023-04237-6
Yadav, M. K., Song, J. H., Vasquez, R., Lee, J. S., Kim, I. H., & Kang, D.-K. (2024). Methods for detection, extraction, purification, and characterization of exopolysaccharides of lactic acid bacteria—A systematic review. Foods, 13(22), 3687. https://doi.org/10.3390/foods13223687
Yu, W., Yang, Y., Zi-Yimuran, M., Yu, L., Zhou, B., Yin, B., Ge, J., & Du, R. (2025). Characterization of exopolysaccharide produced by Leuconostoc mesenteroides fermented in beet waste liquid. Journal of Future Foods. Advance online publication. https://doi.org/10.1016/j.jfutfo.2024.09.010
Zang, J., Kou, Y., Shi, Y., Xiao, L., Ma, K., Zhang, C., Geng, S., Rui, X., Lin, T., & Li, W. (2025). Structural and functional roles of lactic acid bacteria in food delivery systems: A dual perspective of passive encapsulation and active carriers. Advances in Colloid and Interface Science, 344, 103599. https://doi.org/10.1016/j.cis.2025.103599
Zapaśnik, A., Sokołowska, B., & Bryła, M. (2022). Role of lactic acid bacteria in food preservation and safety. Foods, 11(9), 1283. https://doi.org/10.3390/foods11091283
Zhang, K., Liu, S., Liang, S., Xiang, F., Wang, X., Lian, H., Li, B., & Liu, F. (2024). Exopolysaccharides of lactic acid bacteria: Structure, biological activity, structure–activity relationship, and application in the food industry: A review. International Journal of Biological Macromolecules, 257(Part 2), 128733. https://doi.org/10.1016/j.ijbiomac.2023.128733
Zhang, M., Zhao, D., Yang, H., Jiao, X., Zhou, R., Zheng, J., & Wu, C. (2025). Lactic acid bacteria–derived exopolysaccharide: Biosynthesis and antibacterial characterization. Trends in Food Science & Technology, 160, 105033. https://doi.org/10.1016/j.tifs.2025.105033
Published
2026/05/12
Section
Original research paper