Acute promyelocytic leukemia lacking t(15;17): molecular evidence of atypical PML/RAR-α transcriptional variant by gene sequencing
Abstract
Introduction. The accurate diagnosis of acute promyelocytic leukemia (APL), not only on the morphological and clinical, but also on the molecular level, is very important for application of targeted therapies. Case report. A 62-year-old woman presented with APL. By using conventional cytogenetic analysis as well as applying the fluorescence in situ hybridization (FISH) analysis it has not been possible to confirm the presence of t(15;17) in the presented patient. Using reverse transcriptase polymerase chain reaction (RT-PCR) two atypical promyelotic leukemia/retinoic acid receptor alpha (PML/RAR-α) fusion transcripts were identified. Both detected transcripts were isoforms. The larger transcript was in-frame, coding for functional aberrant PML/RAR-α protein, while the shorter transcript was an out-of-frame. Conclusion. Our study highlights the need for the application of molecular methodology in daily clinical practice. Precise characterization of PML/RAR-α fusion transcript creates a basis for identifying rare individual cases that require special caution when treating such patients. To our knowledge this is only the fifth case of atypical PML/RAR-α transcript containing full PML exon 7a, and among them the only one that was cytogenetically cryptic and FISH negative. All of the herein presented cases had lethal outcome. Therefore, our findings with the additional review of the literature, emphasizes the importance of detailed identification of atypical PML/RAR-α fusions, not only for the purpose of knowing their role in leukemogenesis, but also for the assessment of the impact that they can have on the outcome of the treatment.
References
Oku E, Imamura R, Nagata S, Takata Y, Seki R, Otsubo K, et al. Promyelocytic crisis of chronic myelogenous leukaemia during imatinib mesylate treatment. Acta Haematol 2006; 117(4): 191–6.
Pandolfi PP, Alcalay M, Fagioli M, Zangrilli D, Mencarelli A, Div-erio D, et al. Genomic variability and alternative splicing gen-erate multiple PML-RARα transcripts that encode aberrant PML proteins and PML-RARα isoforms in acute promyelocy-tic leukemia. EMBO J 1992; 11(4): 1397–407.
Saeed S, Logie C, Stunnenberg HG, Martens JH. Genome-wide functions of PML–RARα in acute promyelocytic leukaemia. Br J Cancer 2011; 104(4): 554–8.
Grimwade D, Howe K, Langabeer S, Davies L, Oliver F, Walker H, et al. Establishing the presence of the t(15; 17) in suspect-ed acute promyelocytic leukaemia: cytogenetic, molecular and PML immunofluorescence assessment of patients entered into the M. R. C. ATRA trial. M. R. C. Adult Leukaemia Working Party. Br J Haematol 1996; 94(3): 557–73.
Grignani F, De Matteis S, Nervi C, Tomassoni L, Gelmetti V, Ci-oce M, et al. Fusion proteins of the retinoic acid receptor-α re-cruit histone deacetylase in promyelocytic leukaemia. Nature 1998; 391(6669): 815–8.
Pandolfi PP. Oncogenes and tumor suppressors in the molecular pathogenesis of acute promyelocytic leukemia. Hum Mol Genet 2001; 10(7): 769–75.
Zayed A, Couban S, Hayne O, Sparavalo N, Shawwa A, Sadek I, et al. Acute promyelocytic leukemia: a novel PML/RARα fusion that generates a frameshift in the RARα transcript and ATRA resistance. Leuk Lymphoma 2007; 48(3): 489–96.
Quignon F, De Bels F, Koken M, Feunteun J, Ameisen J, de Thé H. PML induces a novel caspase-independent death process. Nat Genet 1998; 20(3): 259–65.
Ibáñez M, Carbonell-Caballero J, García-Alonso L, Such E, Jimé-nez-Almazán J, Vidal E, et al. The mutational landscape of acute promyelocytic leukemia reveals an interacting network of co-occurrences and recurrent mutations. PLoS ONE 2016; 11(2): e0148346.
Lo-Coco F, Ammatuna E, Montesinos P, Sanz MA. Acute pro-myelocytic leukemia: recent advances in diagnosis and man-agement. Semin Oncol 2008; 35(4): 401–9.
Nasr R, Guillemin M, Ferhi O, Soilihi H, Peres L, Berthier C, et al. Eradication of acute promyelocytic leukemia-initiating cells through PML-RARA degradation. Nat Med 2008; 14(12): 1333–42.
Gianni M, Fratelli M, Bolis M, Kurosaki M, Zanetti A, Paroni G, et al. RARα2 and PML-RAR similarities in the control of ba-sal and retinoic acid induced myeloid maturation of acute my-eloid leukemia cells. Oncotarget 2017; 8(23): 37041–60.
Barragán E, Bolufer P, Martı́n G, Cervera J, Moreno I, Capote FJ, et al. Identification of two atypical PML–RARα transcripts in two patients with acute promyelocytic leukemia. Leukemia Res 2002; 26(5): 439–42.
Chillon MC, González M, García-Sanz R, Balanzategui A, Gonzá-lez D, López-Pérez R, et al. Two new 3' PML breakpoints in t(15; 17)(q22; q21)-positive acute promyelocytic leukemia. Genes Chromosomes Cancer 2000; 27(1): 35–43.
Gonzalez M, Barragan E, Bolufer P, Chillon C, Colomer D, Bor-stein R, et al. Pretreatment characteristics and clinical outcome of acute promyelocytic leukaemia patients according to the PML-RARalpha isoforms: a study of the PETHEMA group. Br J Haematol 2001; 114(1): 99–103.
Slack JL, Willman CL, Andersen JW, Li YP, Viswanatha DS, Bloomfield CD, et al. Molecular analysis and clinical outcome of adult APL patients with the type V PML-RAR alpha iso-form: results from intergroup protocol 0129. Blood 2000; 95(2): 398–403.
Vizmanos JL, Larrrayoz MJ, Odero MD, Lasa R, Gonzalez M, Novo FJ, et al. Two new molecular PML-RAR alpha variants: implications for the molecular diagnosis of APL. Haematolog-ica 2002; 87(8): ELT37.
van Dongen J, Macintyre E, Gabert J, Delabesse E, Rossi V, Saglio G, et al. Standardized RT-PCR analysis of fusion gene tran-scripts from chromosome aberrations in acute leukemia for detection of minimal residual disease. Report of the BIO-MED-1 Concerted Action: investigation of minimal residual disease in acute leukemia. Leukemia 1999; 13(12): 1901–28.
Kim MJ, Cho SY, Kim M, Lee JJ, Kang SY, Cho EH, et al. FISH-negative cryptic PML–RARA rearrangement detected by long-distance polymerase chain reaction and sequencing analyses: a case study and review of the literature. Cancer Genet Cytogenet 2010; 203(2): 278–83.
Lewis C, Patel V, Abhyankar S, Zhang D, Ketterling RP, McClure RF, et al.. Microgranular variant of acute promyelocytic leu-kemia with normal conventional cytogenetics, negative PML/RARA FISH and positive PML/RARA transcripts by RT-PCR. Cancer Genet 2011; 204(9): 522–3.
Grimwade D, Biondi A, Mozziconacci MJ, Hagemeijer A, Berger R, Neat M, et al. Characterization of acute promyelocytic leuke-mia cases lacking the classic t(15;17): results of the European Working Party. Groupe Français de Cytogénétique Hé-matologique, Groupe de Français d'Hematologie Cellulaire, UK Cancer Cytogenetics Group and BIOMED 1 European Community-Concerted Action "Molecular Cytogenetic Diag-nosis in Haematological Malignancies". Blood 2001; 96(5): 1297–308.
Brockman SR, Paternoster SF, Ketterling RP, Dewald GW. New highly sensitive fluorescence in situ hybridization method to detect PML/RARA fusion in acute promyelocytic leukemia. Cancer Genet Cytogenet 2003; 145(2): 144–51.
Han J, Kim K, Kim K, Park J, Kim J. Identification of PML–RARA rearrangement by RT-PCR and sequencing in an acute promyelocytic leukemia without t(15;17) on G-banding and FISH. Leuk Res 2007; 31(2): 239–43.
Soriani S, Cesana C, Farioli R, Scarpati B, Mancini V, Nosari A. PML/RAR-α fusion transcript and polyploidy in acute pro-myelocytic leukemia without t(15;17). Leuk Res 2010; 34(9): e261–3.
Reiter A, Saussele S, Grimwade D, Wiemels JL, Segal MR, Laf-age-Pochitaloff M, et al. Genomic anatomy of the specific recip-rocal translocation t(15;17) in acute promyelocytic leukemia. Genes Chromosomes Cancer 2003; 36(2): 175–88.
Ismail S, Ababneh N, Awidi A. Identification of Atypical PML-RARA Breakpoint in a Patient with Acute Promyelocytic Leukemia. Acta Haematol 2007; 118(3): 183–7.
Park TS, Kim JS, Song J, Lee K, Yoon S, Suh B, et al. Acute promyelocytic leukemia with insertion of PML exon 7a and partial deletion of exon 3 of RARA: a novel variant transcript related to aggressive course and not detected with real-time polymerase chain reaction analysis. Cancer Genet Cytogenet 2009; 188(2): 103–7.
De Angelis F, Breccia M. Molecular monitoring as a path to cure acute promyelocytic leukemia. Rare Cancers Ther 2015; 3(1–2): 119–32.
Gupta V, Yi Q, Brandwein J, Chun K, Lipton JH, Messner H, et al. Clinico-biological features and prognostic significance of pml/rarα isoforms in adult patients with acute promyelocytic leukemia treated with all trans retinoic acid (atra) and chemo-therapy. Leuk Lymphoma 2004; 45(3): 469–80.
Gallagher RE, Li YP, Rao S, Paietta E, Andersen J, Etkind P, et al. Characterization of acute promyelocytic leukemia cases with PML-RAR alpha break/fusion sites in PML exon 6: identification of a subgroup with decreased in vitro respon-siveness to all-trans retinoic acid. Blood 1995; 86(4): 1540–7.