Karakterizacija i diverzitet populacije sojeva Erwinia amylovora poreklom iz jabučastih voćaka gajenih u Srbiji
Sažetak
Primenom standardnih bakterioloških i molekularnih metoda proučen je diverzitet 30 sojeva Erwinia amylovora izolovanih iz dunje, kruške i jabuke, poreklom iz 14 lokaliteta u Srbiji. Svi proučavani sojevi izazvali su nekrozu i pojavu bakterijskog eksudata na nesazrelim plodovima kruške, trešnje i šljive, kao i hipersenzitivnu reakciju duvana. Proučavani sojevi bili su Gram i oksidaza negativni, fakultativno anaerobni, levan i katalaza pozitivni i nisu stvarali fluorescentni pigment na Kingovoj podlozi B. Svi sojevi hidrolizuju želatin, koriste citrate i stvaraju kiselinu iz sorbitola, proizvode redukujuće supstance iz saharoze, ne redukuju nitrate, razvijaju se u prisustvu 5% NaCl, ali ne i pri 36°C. Identitet sojeva potvrđen je konvencionalnim PCR i nested PCR metodama. Rep-PCR metodom korišćenjem REP, ERIC i BOX prajmera umnoženo je više fragmenata DNK čiji broj i veličina su se podudarali kod svih proučavanih sojeva. Za razliku od Rep-PCR, primenom RAPD-PCR metode uz korišćenje šest prajmera došlo je do izdavajanja različitih genetičkih profila i diferencijacije sojeva u četiri grupe. Genetičke razlike među proučavanim sojevima nisu bile u korelaciji sa domaćinima iz kojih su izolovani, niti sa njihovim geografskim poreklom i godinom izolacije.
Reference
Arsenijević, M. (1997). Bakterioze biljaka (Plant bacterioses). Novi Sad, Serbia: S Print.
Arsenijević, M., & Gavrilović, V. (2007). Praktični priručnik o bakterioznoj plamenjači voćaka i ukrasnih biljaka (Handbook on fireblight of fruit and ornamental plants). Belgrade, Serbia: Institute for Plant Protection and Environment.
Arsenijević, M., Panić, M., & Antonijević, D. (1991). Fire blight of pomaceous fruit trees in Yugoslavia. Plant Protection, 42(2), 87-97.
Bereswill, S., Pahl, A. Bellemann, P. Zeller, W., & Geider, K. (1992). Sensitive and species-specific detection of Erwinia amylovora by polymerase chain reaction analysis. Applied and Environmental Microbiology, 58(11), 3522-3526.
Brennan, J.M., Doohan, F.M., Egan, D., Scanlan H., & Hayes, D. (2002). Characterization and differentiation of Irish Erwinia amylovora isolates. Journal of Phytopathology, 150(8-9), 414-422. doi:10.1046/j.1439-0434.2002.00789.x
Brown, E.W., Janisiewicz, W., & Van der Zwet, T. (1996). Preliminary phenotypic and genetic differentiation of the fire blight bacterium, Erwinia amylovora. Acta Horticulturae, 411, 199-203. doi:10.17660/actahortic.1996.411.42
Donat, V., Biosca, E.G., Penalver, J., & Lopez, M.M. (2007). Exploring diversity among Spanish strains of Erwinia amylovora and possible infection sources. Journal of Applied Microbiology, 103(5), 1639-1649. doi:10.1111/j.1365-2672.2007.03399.x
Fahy, P.C., & Hayward, A.C. (1983). Media and methods for isolation and diagnostic tests. In P. C. Fahy & G.J. Persley (Eds.), Plant bacterial disease: A diagnostic guide (pp 337-378). Sydney, Australia: Academic Press.
Hampl, V., Pavlicek, A., & Flegr, J. (2001). Construction and bootstrap analysis of DNA fingerprinting-based phylogenetic trees with the freeware program FreeTree: Application to trichomonad parasites. International Journal of Systematic and Evolutionary Microbiology, 51(3), 731-735.
Hevesi, M., Papp, J., Jámbor-Benczúr, E., Kaszáné-Csizmár, K., Pozsgai, I., Gazdag, G., & Balla, I. (2000). Testing the virulence of some Hungarian Erwinia amylovora strains on in vitro cultured apple rootstocks. International Journal of Horticultural Science, 6(4), 52-55.
Ivanović, M., Obradović, A., Gašić, K., Minsavage, G., Dickstein, E.R., & Jones, J.B. (2012). Exploring diversity of Erwinia amylovora population in Serbia by conventional and automated techniques and detection of new PFGE patterns. European Journal of Plant Pathology, 133(3), 545-557.
Jock, S., Donat, V., Lopez, M.M., Bazzi, C., & Geider, K. (2002). Following spread of fire blight in Western, Central and Southern Europe by molecular differentiation of Erwinia amylovora strains with PFGE analysis. Environmental Microbiology, 4(2), 106-114.
Jones, A.L., & Geider, K. (2001). Erwinia amylovora group. In N.W. Schaad, J.B. Jones, W. Chun (Eds.), Laboratory guide for identification of plant pathogenic bacteria (3rd ed). (pp 40-54). St. Paul, MN: APS press.
Keck, M., Hevesi, M., Ruppitsch, W., Stoger, A., & Richter, S. (2002). Spread of fire blight in Austria and Hungary: Variability of Erwinia amylovora strains. Plant Protection Science, 38, 49-55. doi:10.17221/10319-pps
Klement, Z., Rudolph, K., & Sands, D.C., (eds.) (1990). Methods in phytobacteriology. Budapest, Hungary: Akademiai Kiado.
Lecomte, P., Manceau, C., Paulin, J.P., & Keck, M. (1997). Identification by PCR analysis on plasmid pEA29 of isolates of Erwinia amylovora responsible of an outbreak in Central Europe. European Journal of Plant Pathology, 103(1), 91-98. doi:10.1023/a:1008607226805
Lelliott, R.A., & Stead, D.E. (1987). Methods for the diagnosis of bacterial diseases of plants. London, UK: Blackwell.
Llop, P., Bonaterra, A., Penalver, J., & Lopez, M.M. (2000). Development of a highly sensitive nested-PCR procedure using a single closed tube for detection of Erwinia amylovora in asymptomatic plant material. Applied and Environmental Microbiology, 66(5), 2071-2078. doi:10.1128/aem.66.5.2071-2078.2000
Louws, F.J., Rademaker, J.L.W., & de Bruijn, F.J. (1999). The three Ds of PCR-based genomic analysis of phytobacteria: Diversity, detection and disease diagnosis. Annual Review of Phytopathology, 37(1), 81-125. doi:10.1146/annurev.phyto.37.1.81
Manulis-Sasson, S., Kleitman, F., Dror, O., David, I., & Zutra, D. (1998). Characterisation of Erwinia amylovora population in Israel. Phytoparasitica, 26(1), 39-46. doi:10.1007/bf02981264
McManus, P.S., & Jones, A.L. (1995). Genetic fingerprinting of Erwinia amylovora strains isolated from tree-fruit crops and Rubus spp. Phytopathology, 85(12), 1547-1553. doi:10.1094/phyto-85-1547
Momol, M.T., & Aldwinckle, H.S. (2000). Genetic diversity and host range of Erwinia amylovora. In J.L. Vanneste (Ed.), Fire blight: the disease and its causative agent, Erwinia amylovora (pp 55-72). Wallingford, UK: CABI.
Momol, M.T., Momol, E.A., Lamboy, W.F., Norelli, J.L., Beer S.V., & Aldwinckle, H.S. (1997). Characterization of Erwinia amylovora strains using random amplified polymorphic DNA fragments (RAPDs). Journal of Applied Microbiology, 82(3), 389-398. doi:10.1046/j.1365-2672.1997.00377.x
Nei, M., & Li, W.H. (1979). Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences of the United States of America, 76(10), 5269-5273. doi:10.1073/pnas.76.10.5269
Page, R.D.M. (1996). TreeView: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences (CABIOS), 12(4), 357-358. doi:10.1093/bioinformatics/12.4.357
Pastrik, K.-H. & Maiss, E. (2000). Detection of Ralstonia solanacearum in potato tubers by polymerase chain reaction. Journal of Phytopathology, 148(11-12), 619-626. doi:10.1046/j.1439-0434.2000.00567.x
Puławska, J., Kielak, K., & Sobiczewski, P. (2006). Phenotypic and genetic diversity of selected Erwinia amylovora strains from Poland. Acta Horticulturae, 704, 439-44. doi:10.17660/actahortic.2006.704.69
Pulawska, J., & Sobiczewski, P. (2012). Phenotypic and genetic diversity of Erwinia amylovora: the causal agent of fire blight. Trees, 26(1), 3-12.
Radunović, D., Gavrilović, V., Gašić, K., Paunović, M., Stojšin, V., & Grahovac, M. (2017). Molecular characterization of Erwinia amylovora strains originated from pome fruit and indigenous plant in Montenegro. Journal of Plant Pathology, 99(1), 197-203.
Rezzonico, F., Drenova , N., Morocko-Bicevska, I., Baranauskaite, L., Végh, A., Moradi, A. ... Zharmuhamedova, G. (2016). Tracking of Erwinia amylovora dissemination in Eastern Europe and Central Asia using CRISPRs. In: Proceedings of the 1st International Symposium on Fire Blight of Rosaceous Plants, Girona, Spain, 19.
Schaad, N.W. (2001). Initial identification of common genera. In N. W. Schaad, J. B. Jones, W. Chun (Eds.), Laboratory guide for identification of plant pathogenic bacteria (3rd ed) (pp 1-16). St. Paul, MN: APS press.
Schnabel, E.L., & Jones, A.L. (1998). Instability of a pEA29 marker in Erwinia amylovora previously used for strain classification. Plant Disease, 82(12), 1334-1336. doi:10.1094/pdis.1998.82.12.1334
Sholberg, P.L., Bedford, K.E., Haag, P., & Randall, P. (2001). Survey of Erwinia amylovora isolates from British Columbia for resistance to bactericides and virulence on apple. Canadian Journal of Plant Pathology, 23(1), 60-67.
Taylor, R.K., & Hale, C.N. (1998). Identification and characterisation of isolates of Erwinia amylovora from cotoneaster in Australia. Australasian Biotechnology, 8(6), 353-356.
Van der Zwet, T., & Keil, H.L. (1979). Fire Blight. A bacterial disease of rosaceous plants (Agriculture Handbook 510). Washington DC, USA: US Department of Agriculture.
Vanneste, J.L., Lex, S., Vermeulen, M., & Berger, F. (2002). Isolation of Erwinia amylovora from blighted plums (Prunus domestica) and potato roses (Rosa rugosa). Acta Horticulturae, 590, 89-94. doi:10.17660/actahortic.2002.590.10
Végh, A., Némethy, Z., Hajagos, L., & Palkovics, L. (2012). First report of Erwinia amylovora causing fire blight on plum (Prunus domestica L.) in Hungary. Plant Disease, 96(5), 759.
Versalovic, J., Koeuth T., & Lupski, J.R. (1991). Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Research, 19(24), 6823-6831.
Versalovic, J., Schneider, M., de Bruijn, F.J., & Lupski, J.R. (1994). Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods in Molecular and Cellular Biology, 5, 25-40.
- Autori zadržavaju autorska prava i pružaju časopisu pravo prvog objavljivanja rada i licenciraju ga "Creative Commons Attribution licencom" koja omogućava drugima da dele rad, uz uslov navođenja autorstva i izvornog objavljivanja u ovom časopisu.
- Autori mogu izraditi zasebne, ugovorne aranžmane za neekskluzivnu distribuciju članka objavljenog u časopisu (npr. postavljanje u institucionalni repozitorijum ili objavljivanje u knjizi), uz navođenje da je članak izvorno objavljen u ovom časopisu.
- Autorima je dozvoljeno i podstiču se da postave objavljeni članak onlajn (npr. u institucionalni repozitorijum ili na svoju internet stranicu) pre ili tokom postupka prijave rukopisa, s obzirom da takav postupak može voditi produktivnoj razmeni ideja i ranijoj i većoj citiranosti objavljenog članka (Vidi Efekti otvorenog pristupa).