Computer modelling and artificial intelligence with big data for better diagnostics and therapy of cardiovascular disease
Abstract
In silico clinical trials are the future of medicine and virtual testing and simulation are the future of medical engineering. The use of a computational platform can reduce costs and time required for developing new models of medical devices and drugs. The computational platform in different projects, such as SILICOFCM, was developed using state-of-the-art finite element modelling for macro simulation of fluid-structure interaction with micro modelling at the molecular level for drug interaction with the cardiac cells. SILICOFCM platform is used for risk prediction and optimal drug therapy of familial cardiomyopathy in a specific patient. STRATIFYHF project is to develop and clinically validate a truly innovative AI-based Decision Support System for predicting the risk of heart failure, facilitating its early diagnosis and progression prediction that will radically change how heart failure is managed in both primary and secondary care. This rapid expansion in computer modelling, image modalities and data collection, leads to a generation of so-called “Big Data” which are time-consuming to be analyzed by medical experts. In order to obtain 3D image reconstruction, the U-net architecture was used to determine geometric parameters for the left ventricle which were extracted from the echocardiographic apical and M-mode views. A micro-mechanics cellular model which includes three kinetic processes of sarcomeric proteins interactions was developed. It allows simulation of the drugs which are divided into three major groups defined by the principal action of each drug. The presented results were obtained with the parametric model of the left ventricle, where pressure-volume (PV) diagrams depend on the change of Ca2+. It directly affects the ejection fraction. The presented approach with the variation of the left ventricle (LV) geometry and simulations which include the influence of different parameters on the PV diagrams are directly interlinked with drug effects on the heart function. It includes different drugs such as Entresto and Digoxin that directly affect the cardiac PV diagrams and ejection fraction. Computational platforms such as the SILICOFCM and STRATIFYHF platforms are novel tools for risk prediction of cardiac disease in a specific patient that will certainly open a new avenue for in silico clinical trials in the future.
References
Andreu-Perez, J., Poon, C., Merrifield, R., Wong, S., & Yang, G. (2015). Big data for health. IEEE journal of biomedical and health informatics, 19(4), 1193-1208.
Armbrust, M., Fox, A., & Griffith, R. (2010). A view of cloud computing. Commun ACM, 54(4), 50-58.
Belle, A., Thiagarajan, R., Soroushmehr, S., Navidi, F., Beard, D., & Najarian, K. (2015). Big data analytics in healthcare. BioMed research international, 370194.
Bosch J. G, et al. (2002). Automatic segmentation of echocardiographic sequences by active appearance motion models. IEEE Transactions on Medical Imaging, 21 (11), 1374–1383, doi: 10.1109/tmi.2002.806427.
Dean, J., & Ghemawat, S. (2008). MapReduce: simplified data processing on large clusters. Communications of the ACM, 51(1), 107-113.
Demchenko, Y., Grosso, P., De Laat, C., & Membrey, P. (2013). Addressing big data issues in scientific data infrastructure. In: 2013 International conference on collaboration technologies and systems (CTS) (pp. 48-55). IEEE.
Dilsizian, S. E., & Siegel, E. L. (2014). Artificial intelligence in medicine and cardiac imaging: harnessing big data and advanced computing to provide personalized medical diagnosis and treatment. Current cardiology reports, 16, 1-8.
Elliott, P. M. et al. (2014). European Heart Journal, 35(39):2733-79.
Filipovic, N., Sustersic, T., Milosevic, M., Milicevic, B., Simic, V., Prodanovic, M., & Kojic, M. (2022). SILICOFCM platform, multiscale modelling of left ventricle from echocardiographic images and drug influence for cardiomyopathy disease. Computer Methods and Programs in Biomedicine, 227, 107194.
Gibbons Kroeker, C. A., Adeeb, S., Tyberg, J. V. and Shrive, N. G. (2006). A 2D FE model of the heart demonstrates the role of the pericardium in ventricular deformation, American Journal of Physiology, vol. 291, no. 5, pp. H2229–H2236.
Hershberger et al. (2010). Official journal of the American College of Medical Genetics, 12(11): 655-667.
Kojic, M., Milosevic, M., Simic, V., Milicevic, B., Geroski, V., Nizzero, S., Ziemys, A., Filipovic, N., Ferrari, M. (2019). Smeared Multiscale Finite Element Models for Mass Transport and Electrophysiology Coupled to Muscle Mechanics, Frontiers in Bioengineering and Biotechnology, ISSN 2296-4185, (7) 381, 1-16, 2296-4185.
Kojic, M., Milosevic, M., Simic, V., Milicevic, B., Geroski, V., & Nizzero, S. (2019). Smeared multiscale finite element models for mass transport and electrophysiology coupled to muscle mechanics. Frontiers in Bioengineering and Biotechnology, 7(381).
Kouanou, A. T., Tchiotsop, D., Kengne, R., Zephirin, D. T., Armele, N. M., & Tchinda, R. (2018). An optimal big data workflow for biomedical image analysis. Informatics in Medicine Unlocked, 11, 68-74.
Lavignon, J. F., Lecomber, D., Phillips, I., Subirada, F., Bodin, F., Gonnord, J., & Muggeridge, M. (2013). ETP4HPC strategic research agenda achieving HPC leadership in Europe.
Luo, J., Wu, M., Gopukumar, D., & Zhao, Y. (2016). Big data application in biomedical research and health care: a literature review. Biomedical informatics insights, 8, BII-S31559.
McNally, E. M. et al. (2013). The Journal of Clinical Investigation, 123(1):19-26.
Mijailovich, S M., Prodanovic, M., Poggesi, C., Geeves, M. A., Regnier, M. (2021). Multiscale modelling of twitch contractions in cardiac trabeculae, J Gen Physiol, 153 (3).
Mijailovich, S. M., Stojanovic, B., Nedic, D., Svicevic, M., Geeves, M. A., Irving, T. C., Granzier, H. (2019). Nebulin and Titin Modulate Cross-bridge Cycling and Length Dependent Calcium Sensitivity J Gen Physiol 151(5), 680-704.
Moradi. S. et al. (2019). MFP-Unet: A novel deep learning-based approach for left ventricle segmentation in echocardiography, Physica Medica, 67, 58–69.
Noble, J. A. and Boukerroui, D. (2006). Ultrasound image segmentation: a survey, IEEE Transactions on Medical Imaging, 25, 8, 987–1010, doi: 10.1109/tmi.2006.877092.
Parashar, M. (2014). Big data challenges in simulation-based science. DICT@ HPDC, 1-2.
Pullan, A. J., Buist, M. L. and Cheng, L. K. (2005). Mathematically Modelling the Electrical Activity of the Heart – from Cell to Body Surface and Back Again, World Scientific.
Razzak, M. I., Naz, S., & Zaib, A. (2018). Deep learning for medical image processing: Overview, challenges and the future. Classification in BioApps: Automation of Decision Making, 323-350.
SILICOFCM: In Silico trials for drug tracing the effects of sarcomeric protein mutations leading to familial cardiomyopathy, 777204, 2018-2022, www.silicofcm.eu
STRATIFYHF: Artificial intelligence-based decision support system for risk stratification and early detection of heart failure in primary and secondary care, No 101080905, 2023-2028, www.stratifyhf.eu
Tchito Tchapga, C., Mih, T. A., Tchagna Kouanou, A., Fozin Fonzin, T., Kuetche Fogang, P., Mezatio, B. A. & Tchiotsop, D. (2021). Biomedical image classification in a big data architecture using machine learning algorithms. Journal of Healthcare Engineering, 1-11.
Trudel, M. C., Dubé, B., Potse, M., Gulrajani, R. M. and Leon, L. J. (2004). Simulation of QRST integral maps with a membrane-based computer heart model employing parallel processing, IEEE Transactions on Biomedical Engineering, vol. 51, no. 8, pp. 1319–1329.
White, T. (2015). Hadoop: The Definitive Guide. Sebastopol, CA: O’Reilly Media, Inc.